Index A | B | C | D | E | F | I | K | L | M | N | P | R | S | T | V A allele (mhcmatch.store.Restriction attribute) alleles() (mhcmatch.store.Store method) anchor_indices() (in module mhcmatch.store) anchor_model() (mhcmatch.store.Store method) anchor_preferences() (mhcmatch.store.Store method) anchor_score (mhcmatch.store.Restriction attribute) AnchorModel (class in mhcmatch.diffusion) anchors (mhcmatch.store.Decomposition attribute) B binder (mhcmatch.store.Restriction attribute) C class2_key() (in module mhcmatch.pseudoseq) cluster() (mhcmatch.pseudoseq.Pseudoseq method) D decompose() (mhcmatch.store.Store method) Decomposition (class in mhcmatch.store) E enrichment (mhcmatch.store.Restriction attribute) F find_source() (mhcmatch.proteome.Proteome method) from_fasta() (mhcmatch.proteome.Proteome class method) from_pmhc() (mhcmatch.store.Store class method) from_records() (mhcmatch.store.Store class method) I infer_class() (in module mhcmatch.store) is_binder() (mhcmatch.store.Store method) is_presented() (mhcmatch.store.Store method) K kernel() (mhcmatch.pseudoseq.Pseudoseq method) L learn_anchor_weights() (in module mhcmatch.pseudoseq) load_pseudo() (in module mhcmatch.pseudoseq) load_structural_weights() (in module mhcmatch.pseudoseq) M Match (class in mhcmatch.search) mhcmatch.diffusion module mhcmatch.logo module mhcmatch.proteome module mhcmatch.pseudoseq module mhcmatch.search module mhcmatch.store module module mhcmatch.diffusion mhcmatch.logo mhcmatch.proteome mhcmatch.pseudoseq mhcmatch.search mhcmatch.store motif() (in module mhcmatch.logo) mutations (mhcmatch.proteome.SourceHit attribute) mutual_information() (in module mhcmatch.pseudoseq) N n_subs (mhcmatch.proteome.SourceHit attribute) n_votes (mhcmatch.store.Restriction attribute) neighbors() (mhcmatch.pseudoseq.Pseudoseq method) normalize_allele() (in module mhcmatch.pseudoseq) P peptide (mhcmatch.search.Match attribute) (mhcmatch.store.Decomposition attribute) position (mhcmatch.proteome.SourceHit attribute) presentation (mhcmatch.store.Decomposition attribute) protein (mhcmatch.proteome.SourceHit attribute) Proteome (class in mhcmatch.proteome) Pseudoseq (class in mhcmatch.pseudoseq) R read_fasta() (in module mhcmatch.proteome) ref_peptide (mhcmatch.proteome.SourceHit attribute) render() (in module mhcmatch.logo) resolve_allele() (in module mhcmatch.pseudoseq) resolve_anchor_index() (in module mhcmatch.store) Restriction (class in mhcmatch.store) restriction() (mhcmatch.store.Store method) S scan_protein() (mhcmatch.store.Store method) score (mhcmatch.search.Match attribute) score() (mhcmatch.diffusion.AnchorModel method) search() (in module mhcmatch.search) shared_kmers (mhcmatch.search.Match attribute) shrink() (mhcmatch.pseudoseq.Pseudoseq method) SourceHit (class in mhcmatch.proteome) Store (class in mhcmatch.store) T tcr_facing (mhcmatch.store.Decomposition attribute) V vote (mhcmatch.store.Restriction attribute)