API Reference
=============

.. currentmodule:: seqtree

Index
-----

.. autoclass:: Index
   :members:
   :undoc-members:

SearchParams
------------

.. autoclass:: SearchParams
   :members:
   :undoc-members:

Hit
---

.. autoclass:: Hit
   :members:
   :undoc-members:

Alignment
---------

.. autoclass:: Alignment
   :members:
   :undoc-members:

Functions
---------

.. autofunction:: pairwise_batch