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VDJdb 0.1.0

Getting started
Submitting and curating
Terminology: antigen, epitope, and what a receptor recognises
The chunk format

GitHub

Getting started
Submitting and curating
Terminology: antigen, epitope, and what a receptor recognises
The chunk format
Column reference
The confidence score
CDR3 fixing
Identifiers
The reference corpus
AIRR mapping
VDJdb build outputs
Motif denoising and tuning
Motif clustering algorithms, parameters and scorecards
Building and releasing
Migrating the build onto arda 2.36.0 + vdjtools 4.8.0
The summary dashboard

GitHub

Getting started

Getting started
Submitting and curating

Data standards

Terminology: antigen, epitope, and what a receptor recognises
The chunk format
Column reference
The confidence score
CDR3 fixing
Identifiers
The reference corpus
AIRR mapping
VDJdb build outputs

Motif inference

Motif denoising and tuning
Motif clustering algorithms, parameters and scorecards

Builds

Building and releasing
Migrating the build onto arda 2.36.0 + vdjtools 4.8.0
The summary dashboard

Index

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