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vdjmatch 0.4.0

  • GitHub
  • GitHub

Tutorials

  • Getting started

How-to guides

  • Workflows
  • Examples
  • Notebooks
    • Cohort annotation
    • Geometry comparison
    • ROC and precision–recall
    • Vaccination repertoire
    • Precursor estimates
    • Precursor method
  • Laptop resources

Reference

  • Command line
  • Python API
  • Release notes

Explanation

  • Evidence and calibration
  • Score derivation
  • Marginal junction generation probability
  • Validation data: measured precursor frequencies
  • Overview: module code

All modules for which code is available

  • vdjmatch.aggregate.candidates
  • vdjmatch.aggregate.enrichment
  • vdjmatch.api
  • vdjmatch.cluster.overlap
  • vdjmatch.db.vdjdb
  • vdjmatch.evalue.control
  • vdjmatch.evalue.kernel
  • vdjmatch.evalue.local_rank
  • vdjmatch.evalue.paired
  • vdjmatch.evalue.single
  • vdjmatch.io.airr
  • vdjmatch.io.columns
  • vdjmatch.match.engine
  • vdjmatch.match.motifs
  • vdjmatch.match.paired
  • vdjmatch.match.scope
  • vdjmatch.match.scoring
  • vdjmatch.match.scoring_audit
  • vdjmatch.match.tcrdist
  • vdjmatch.precursor.compendium
  • vdjmatch.precursor.events
  • vdjmatch.precursor.frequency
  • vdjmatch.precursor.mass
  • vdjmatch.precursor.model
  • vdjmatch.precursor.report
  • vdjmatch.precursor.unseen
  • vdjmatch.runner.annotation

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