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arda 2.10.0 documentation

  • Installation
  • Usage
  • D segments and tandem D-D
  • Somatic hypermutation
  • Error correction
    • Run QC, verbosity and logging
    • Pipeline integration
    • Running on a cluster (SLURM)
    • Use cases and analysis guidelines
    • Reference database build
    • Exporting the reference
    • API reference
  • GitHub
  • Installation
  • Usage
  • D segments and tandem D-D
  • Somatic hypermutation
  • Error correction
  • Run QC, verbosity and logging
  • Pipeline integration
  • Running on a cluster (SLURM)
  • Use cases and analysis guidelines
  • Reference database build
  • Exporting the reference
  • API reference
  • GitHub
  • Overview: module code

All modules for which code is available

  • arda._database_fetch
  • arda._log
  • arda.adapter
  • arda.annotate.cigar
  • arda.annotate.contig
  • arda.annotate.dmap
  • arda.annotate.io
  • arda.annotate.mapper
  • arda.annotate.reference
  • arda.annotate.shortlist
  • arda.annotate.transfer
  • arda.cdr3fix
  • arda.cluster
  • arda.dpost
  • arda.igblast
  • arda.mmseqs
  • arda.paths
  • arda.prefilter
  • arda.refbuild.build
  • arda.refbuild.combinations
  • arda.refbuild.imgt
  • arda.refbuild.segments
  • arda.refbuild.translate
  • arda.rnaseq._res
  • arda.rnaseq.assemble
  • arda.rnaseq.correct
  • arda.rnaseq.map
  • arda.rnaseq.pipeline
  • arda.stats

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