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arda 2.38.4

Quickstart
Installation
Usage
Run within a CPU and memory budget

GitHub

Quickstart
Installation
Usage
Run within a CPU and memory budget
Recipes
Use cases and analysis guidelines
Single cell
Quality control
Samples split across files
Running on a cluster (SLURM)
Pipeline integration
Command reference
Output files and columns
Glossary
Benchmarks
Exporting the reference
Reference database build
API reference
How arda works
Productivity: productive, stop_codon, vj_in_frame
Error correction
Somatic hypermutation
D segments and tandem D-D
Personalized germline: genotype and call restriction
Recombination scenarios

GitHub

Tutorial

Quickstart

How-to guides

Installation
Usage
Run within a CPU and memory budget
Recipes
Use cases and analysis guidelines
Single cell
Quality control
Samples split across files
Running on a cluster (SLURM)
Pipeline integration

Reference

Command reference
Output files and columns
Glossary
Benchmarks
Exporting the reference
Reference database build
API reference

Explanation

How arda works
Productivity: productive, stop_codon, vj_in_frame
Error correction
Somatic hypermutation
D segments and tandem D-D
Personalized germline: genotype and call restriction
Recombination scenarios

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