Skip to main content
Ctrl+K

seqtree

  • Getting Started
  • Engines & Concepts
  • Examples
  • Text search
  • Pairwise alignment
    • Edit distances and Hamming balls
    • Gap-block alignment and calibrated cutoffs
    • E-values: is this hit real?
    • Epitope (pMHC) search
    • API Reference
    • Benchmarks
    • Roadmap
  • GitHub
  • Getting Started
  • Engines & Concepts
  • Examples
  • Text search
  • Pairwise alignment
  • Edit distances and Hamming balls
  • Gap-block alignment and calibrated cutoffs
  • E-values: is this hit real?
  • Epitope (pMHC) search
  • API Reference
  • Benchmarks
  • Roadmap
  • GitHub

Start here

  • Getting Started
  • Engines & Concepts
  • Examples

Searching

  • Text search
  • Pairwise alignment
  • Edit distances and Hamming balls
  • Gap-block alignment and calibrated cutoffs

Significance

  • E-values: is this hit real?
  • Epitope (pMHC) search

Reference

  • API Reference
  • Benchmarks
  • Roadmap
  • Overview: module code

All modules for which code is available

  • seqtree._core
  • seqtree.control
  • seqtree.distance
  • seqtree.evalue
  • seqtree.gapblock
  • seqtree.layout
  • seqtree.pairwise
  • seqtree.pmhc
  • seqtree.seeds

© Copyright 2026, antigenomics.

Created using Sphinx 9.1.0.

Built with the PyData Sphinx Theme 0.21.0.