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seqtree

  • Getting Started
  • Engines & Concepts
  • API Reference
  • E-values for TCR hits
  • Pairwise alignment without BioPython
    • Plain edit distances: Hamming and Levenshtein
    • Gap-block alignment and calibrated cutoffs
    • Examples
    • Epitope (pMHC) search
    • Benchmarks
    • Roadmap
  • GitHub
  • Getting Started
  • Engines & Concepts
  • API Reference
  • E-values for TCR hits
  • Pairwise alignment without BioPython
  • Plain edit distances: Hamming and Levenshtein
  • Gap-block alignment and calibrated cutoffs
  • Examples
  • Epitope (pMHC) search
  • Benchmarks
  • Roadmap
  • GitHub
  • Overview: module code

All modules for which code is available

  • seqtree._core
  • seqtree.control
  • seqtree.distance
  • seqtree.evalue
  • seqtree.gapblock
  • seqtree.layout
  • seqtree.pairwise
  • seqtree.pmhc
  • seqtree.seeds

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