Index A | B | C | E | G | H | I | L | M | N | O | P | R | S A align() (seqtree.Index method) aligned_query (seqtree.Alignment property) aligned_ref (seqtree.Alignment property) Alignment (class in seqtree) B build() (seqtree.Index static method) C collisions_batch() (seqtree.Index method) E engine (seqtree.SearchParams property) G gap_extend (seqtree.SearchParams property) gap_open (seqtree.SearchParams property) H Hit (class in seqtree) I Index (class in seqtree) L load() (seqtree.Index static method) M matrix (seqtree.SearchParams property) max_dels (seqtree.SearchParams property) max_ins (seqtree.SearchParams property) max_penalty (seqtree.SearchParams property) max_subs (seqtree.SearchParams property) max_total_edits (seqtree.SearchParams property) mode (seqtree.SearchParams property) N n_dels (seqtree.Hit property) n_ins (seqtree.Hit property) n_subs (seqtree.Hit property) O ops (seqtree.Alignment property) P pairwise_batch() (in module seqtree) R ref_id (seqtree.Hit property) ref_seq() (seqtree.Index method) S save() (seqtree.Index method) score (seqtree.Alignment property) (seqtree.Hit property) search() (seqtree.Index method) search_batch() (seqtree.Index method) search_top() (seqtree.Index method) SearchParams (class in seqtree)