Index A | B | C | E | F | G | J | L | M | N | P | S | T | U | V | Z A aa_to_reduced() (in module mir.basic.alphabets) airr_aliases_for_locus() (in module mir.basic.aliases) B back_translate() (in module mir.basic.alphabets) C compute_batch_corrected_gene_usage() (in module mir.basic.gene_usage) correction_factors() (mir.basic.gene_usage.GeneUsage method) E expand_kmers() (in module mir.basic.token_tables_pl) F fetch_by_annotated_kmer() (in module mir.basic.token_tables_pl) fetch_by_kmer() (in module mir.basic.token_tables_pl) from_dataframe() (mir.basic.gene_usage.GeneUsage class method) from_list() (mir.basic.gene_usage.GeneUsage class method) from_repertoire() (mir.basic.gene_usage.GeneUsage class method) from_sample() (mir.basic.gene_usage.GeneUsage class method) G GeneUsage (class in mir.basic.gene_usage) get_gene_usage_from_olga_model() (in module mir.basic.gene_usage) get_resource_path() (in module mir) J j_fraction() (mir.basic.gene_usage.GeneUsage method) j_usage() (mir.basic.gene_usage.GeneUsage method) L loci (mir.basic.gene_usage.GeneUsage property) locus_search_tokens() (in module mir.basic.aliases) M make_alphabet() (in module mir.basic.alphabets) marginalize_batch_corrected_gene_usage() (in module mir.basic.gene_usage) mask() (in module mir.basic.alphabets) matches() (in module mir.basic.alphabets) matches_aa_reduced() (in module mir.basic.alphabets) mir module mir.basic.aliases module mir.basic.alphabets module mir.basic.gene_usage module mir.basic.token_tables_pl module module mir mir.basic.aliases mir.basic.alphabets mir.basic.gene_usage mir.basic.token_tables_pl N normalize_airr_locus_value() (in module mir.basic.aliases) normalize_locus_alias() (in module mir.basic.aliases) normalize_species_alias() (in module mir.basic.aliases) P precompute_olga_gene_usage_probabilities() (in module mir.basic.gene_usage) S strip_alleles (mir.basic.gene_usage.GeneUsage attribute) summarize_by_c() (in module mir.basic.token_tables_pl) summarize_by_c_chunked() (in module mir.basic.token_tables_pl) summarize_by_gene() (in module mir.basic.token_tables_pl) summarize_by_gene_chunked() (in module mir.basic.token_tables_pl) summarize_by_pos() (in module mir.basic.token_tables_pl) summarize_by_pos_chunked() (in module mir.basic.token_tables_pl) summarize_by_v() (in module mir.basic.token_tables_pl) summarize_by_v_chunked() (in module mir.basic.token_tables_pl) T total() (mir.basic.gene_usage.GeneUsage method) U usage_comparison() (mir.basic.gene_usage.GeneUsage method) V v_fraction() (mir.basic.gene_usage.GeneUsage method) v_usage() (mir.basic.gene_usage.GeneUsage method) validate() (in module mir.basic.alphabets) vj_fraction() (mir.basic.gene_usage.GeneUsage method) vj_usage() (mir.basic.gene_usage.GeneUsage method) Z zscore_to_sigmoid() (in module mir.basic.gene_usage)
