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tcren 0.1.0 documentation

  • Getting started
  • Performance
  • API reference
  • 2D complementarity maps
  • 3D peptide-binding pocket with CDR overlay
    • The canonical TCR-pMHC frame — figures & summary
    • PyMOL renders of canonically-oriented TCR-pMHC complexes
    • Contact thresholds & bond types across all region pairs
    • MHC pseudosequence (MPS) vs. peptide contacts
    • Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
    • TCRen potential & contact-statistics analysis
  • Getting started
  • Performance
  • API reference
  • 2D complementarity maps
  • 3D peptide-binding pocket with CDR overlay
  • The canonical TCR-pMHC frame — figures & summary
  • PyMOL renders of canonically-oriented TCR-pMHC complexes
  • Contact thresholds & bond types across all region pairs
  • MHC pseudosequence (MPS) vs. peptide contacts
  • Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
  • TCRen potential & contact-statistics analysis
  • Overview: module code

All modules for which code is available

  • tcren.analysis
  • tcren.annotation.arda_adapter
  • tcren.annotation.cgene
  • tcren.annotation.chains
  • tcren.cli
  • tcren.contactmap
  • tcren.contacts.definitions
  • tcren.contacts.geometry
  • tcren.contacts.table
  • tcren.mhc.domains
  • tcren.mhc.imgt
  • tcren.mhc.linker
  • tcren.mhc.mapper
  • tcren.mhc.pseudo
  • tcren.mhc.reference
  • tcren.mhc.regions
  • tcren.orient.align
  • tcren.orient.chains
  • tcren.orient.docking
  • tcren.orient.exceptions
  • tcren.orient.frame
  • tcren.orient.pipeline
  • tcren.paths
  • tcren.pipeline
  • tcren.potential.derive
  • tcren.potential.model
  • tcren.refine
    • tcren.refine.substitute
  • tcren.scoring
  • tcren.structure.io
  • tcren.structure.model

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