API reference

• tcren package
  • Structure I/O
  • Annotation
  • MHC mapping
  • Contacts and per-residue geometry
  • The descriptor catalogue
  • Topology: the shape of the contact set
  • Energetics: sums of a pair potential, and differences of them
  • Mechanics: the contact map as something that can break
  • Docking geometry and canonical orientation
  • Potentials
  • The score set
  • Fit-free cohort scores
  • Epitope scoring and ranking
  • Peptide substitution and refinement
  • Data paths, metadata and provenance
  • Analysis
  • 2D projection and visualization
  • Reference data and reproduction
  • Command line