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tcren 2.5.0 documentation

  • Getting started
  • Structure summary (oracle)
  • Interface feature reference
  • Figure gallery
  • A kit for AI-generated TCR–pMHC structures
    • Performance
    • API reference
    • 2D complementarity maps
    • 3D peptide-binding pocket with CDR overlay
    • The canonical TCR-pMHC frame — figures & summary
    • PyMOL renders of canonically-oriented TCR–pMHC complexes
    • Contact thresholds & bond types across all region pairs
    • MHC pseudosequence (MPS) vs. peptide contacts
    • Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
    • TCRen potential & contact-statistics analysis
  • Getting started
  • Structure summary (oracle)
  • Interface feature reference
  • Figure gallery
  • A kit for AI-generated TCR–pMHC structures
  • Performance
  • API reference
  • 2D complementarity maps
  • 3D peptide-binding pocket with CDR overlay
  • The canonical TCR-pMHC frame — figures & summary
  • PyMOL renders of canonically-oriented TCR–pMHC complexes
  • Contact thresholds & bond types across all region pairs
  • MHC pseudosequence (MPS) vs. peptide contacts
  • Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
  • TCRen potential & contact-statistics analysis

Section Navigation

  • tcren package
  • API reference

API reference#

  • tcren package
    • Structure I/O
    • Annotation
    • MHC mapping
    • Contacts
    • Potentials
    • Scoring
    • Data paths
    • Analysis
    • Orientation
    • 2D projection & visualization
    • Reference data & reproduction
    • Command line

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