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tcren 0.1.0 documentation

  • Getting started
  • Performance
  • API reference
  • 2D complementarity maps
  • 3D peptide-binding pocket with CDR overlay
    • The canonical TCR-pMHC frame — figures & summary
    • PyMOL renders of canonically-oriented TCR-pMHC complexes
    • Contact thresholds & bond types across all region pairs
    • MHC pseudosequence (MPS) vs. peptide contacts
    • Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
    • TCRen potential & contact-statistics analysis
  • Getting started
  • Performance
  • API reference
  • 2D complementarity maps
  • 3D peptide-binding pocket with CDR overlay
  • The canonical TCR-pMHC frame — figures & summary
  • PyMOL renders of canonically-oriented TCR-pMHC complexes
  • Contact thresholds & bond types across all region pairs
  • MHC pseudosequence (MPS) vs. peptide contacts
  • Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
  • TCRen potential & contact-statistics analysis

Python Module Index

t
 
t
- tcren
    tcren.analysis
    tcren.annotation.arda_adapter
    tcren.annotation.cgene
    tcren.annotation.chains
    tcren.cli
    tcren.contactmap
    tcren.contacts.definitions
    tcren.contacts.geometry
    tcren.contacts.table
    tcren.mhc.domains
    tcren.mhc.imgt
    tcren.mhc.linker
    tcren.mhc.mapper
    tcren.mhc.pseudo
    tcren.mhc.reference
    tcren.mhc.regions
    tcren.orient.align
    tcren.orient.chains
    tcren.orient.docking
    tcren.orient.exceptions
    tcren.orient.frame
    tcren.orient.pipeline
    tcren.paths
    tcren.pipeline
    tcren.potential.derive
    tcren.potential.model
    tcren.refine
    tcren.refine.substitute
    tcren.scoring
    tcren.structure.io
    tcren.structure.model

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