Python Module Index t t tcren tcren.analysis tcren.annotation.arda_adapter tcren.annotation.batch tcren.annotation.cgene tcren.annotation.chains tcren.binder tcren.binder.noise tcren.clashes tcren.cli tcren.cohort tcren.contact_types tcren.contactmap tcren.contacts.definitions tcren.contacts.geometry tcren.contacts.table tcren.cpl tcren.descriptors tcren.descriptors.catalogue tcren.descriptors.compute tcren.descriptors.table tcren.docking.align tcren.docking.angles tcren.docking.chains tcren.docking.exceptions tcren.docking.frame tcren.docking.graft tcren.docking.pipeline tcren.docking.superimpose tcren.docking.tcrdock_geometry tcren.energetics tcren.energetics.mutation tcren.energetics.rotamers tcren.energetics.scoring tcren.geometry tcren.mechanics tcren.mechanics.dynamics tcren.mechanics.springs tcren.mechanics.stability tcren.metadata tcren.mhc.domains tcren.mhc.imgt tcren.mhc.linker tcren.mhc.mapper tcren.mhc.pseudo tcren.mhc.reference tcren.mhc.regions tcren.oracle tcren.paper.bootstrap tcren.paper.helpers tcren.paths tcren.pipeline tcren.potential.aaindex tcren.potential.derive tcren.potential.model tcren.potential.redundancy tcren.potts tcren.project2d.frame tcren.project2d.pockets tcren.project2d.tables tcren.provenance tcren.recent tcren.recognition tcren.refine tcren.refine.anchors tcren.refine.engines.base tcren.refine.engines.ccd tcren.refine.engines.dope tcren.refine.engines.openmm_engine tcren.refine.engines.promod3_engine tcren.refine.interface tcren.refine.model tcren.refine.oracle_flexpep tcren.refine.register tcren.refine.rmsd tcren.refine.substitute tcren.score.fit tcren.score.model tcren.score.transform tcren.scoring_rank tcren.shuffle tcren.stacking tcren.structure.io tcren.structure.model tcren.topology tcren.topology.footprint tcren.topology.graph tcren.topology.literature tcren.topology.pose tcren.topology.surface tcren.torsions tcren.viz.palette tcren.viz.pocket3d tcren.viz.pymol tcren.viz.surface2d tcren.viz.svg2d