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tcren 4.4.3 documentation

Frozen confidence-dependent recognition score
Figure gallery
Install and rank models
Reproduce structural calculations
Task-specific ranking scores

Frozen confidence-dependent recognition score
Figure gallery
Install and rank models
Reproduce structural calculations
Task-specific ranking scores
MD trajectory validation
Batching and performance
Working with modelled complexes
Reference dependencies and historical models
Choose the confidence context
Three-proportion recognition score
Residue contact motifs above background
Beyond the contact sum
The amino-acid background, in 3D
Screen a cohort
MHC annotation and supplied alleles
Interface feature reference
Every descriptor, with its units
Potentials
Experimental contact penalties
Generated-model inspection
pMHC feature–performance associations
Evaluation and reproduction commands
API reference
CDR3 chemical-neighborhood diagnostics
Within-residue atom-pattern potential — frozen design, 21 October 2026
Inventory-aware whole contact patterns
Chemical core: frozen numerical specification
Experimental ranking APIs
Structure summary (oracle)
Assessing a modelled complex
Historical contact-map Potts model
Reliability: scoring one modelled structure
TCRvdb: replay the frozen score and inspect recorded figure tables
2D complementarity maps
3D peptide-binding pocket with CDR overlay
The canonical TCR-pMHC frame — figures & summary
PyMOL renders of canonically-oriented TCR–pMHC complexes
Contact thresholds & bond types across all region pairs
MHC pseudosequence (MPS) vs. peptide contacts
Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
tcren · pMHC surface topography

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