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tcren 3.2.0 documentation
Getting started
Assessing a modelled complex
Interface feature reference
Every descriptor, with its units
Structure summary (oracle)
More
Potentials
Contact-map Potts model
Beyond the contact sum
Reliability: scoring one modelled structure
A kit for AI-generated TCR–pMHC structures
Figure gallery
Performance
API reference
Ranking receptors for a fixed epitope — the 22-cohort VDJdb panel
Ranking peptides for a fixed receptor — combinatorial peptide libraries
2D complementarity maps
3D peptide-binding pocket with CDR overlay
The canonical TCR-pMHC frame — figures & summary
PyMOL renders of canonically-oriented TCR–pMHC complexes
Contact thresholds & bond types across all region pairs
MHC pseudosequence (MPS) vs. peptide contacts
Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
tcren · pMHC surface topography
TCRen potential & contact-statistics analysis
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Getting started
Assessing a modelled complex
Interface feature reference
Every descriptor, with its units
Structure summary (oracle)
Potentials
Contact-map Potts model
Beyond the contact sum
Reliability: scoring one modelled structure
A kit for AI-generated TCR–pMHC structures
Figure gallery
Performance
API reference
Ranking receptors for a fixed epitope — the 22-cohort VDJdb panel
Ranking peptides for a fixed receptor — combinatorial peptide libraries
2D complementarity maps
3D peptide-binding pocket with CDR overlay
The canonical TCR-pMHC frame — figures & summary
PyMOL renders of canonically-oriented TCR–pMHC complexes
Contact thresholds & bond types across all region pairs
MHC pseudosequence (MPS) vs. peptide contacts
Example — GILGFVFTL / HLA-A*02:01 and the CDR3β Arg–Ser motif
tcren · pMHC surface topography
TCRen potential & contact-statistics analysis
System Settings
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Search
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